In other words, Obama says he will veto any bill that forbids his appointees or officers from telling a soldier that he cannot mention Jesus during prayer or have a Bible on his desk, or that keeps those appointees from telling a chaplain (who is an ordained clergyman) what religious teachings he is allowed to give in worship services, or what spiritual counseling he can give to another soldier.
ntrcsr7 note – according to this article the name of Jesus is outlawed, but no one said anything about allah. If the president does veto this bill, you can expect many more casualties in our armed forces.